BtaINT0006674 @ bosTau6
Intron Retention
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1890986-1897877:+
Coord C1 exon
chr25:1890986-1891140
Coord A exon
chr25:1891141-1897721
Coord C2 exon
chr25:1897722-1897877
Length
6581 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCCATCCCTGCCGTTTCAGCTG
3' ss Score
7.88
Exon sequences
Seq C1 exon
GACTTACTACACCTTCAAGAGGACAGGTATTTATCAATGGATATGAACTTTCTAAAGACATGCTTCAAATCCGGAAGAGCATGGGCTGGTGCCCCCAGCATGATATCTTGTATGATAACTTGACTGTAGCGGAACATCTTTATTTCTATGCTCAG
Seq A exon
GTGAGTCGGTGGGTGATAGACTTGGTTTCCTCTGTATCCATTTTTAAGGATGGTAAGATAACTTGCAACTTTCTGACTCAACCTCAGAGAAACTAGATACCTTGTACGGACACTATTCCCTAAACATTCAGGAAAAGGCAGGGGTGTGGCATTTAAGATCTTTGAATTAGAGAGTTTCTAGAAAGTATTGTTTTAGTCTAATTATTTACTTTATTGATGAAATTCACATATCATAAAATTCATCATTTTGCTTATTTTGCAATATAAAATTCAGTAGTTTTAAAAACTACATTCACAGCACTCTCTAACTACAGAACATTTTCATCTCCCTGAAAACAAACCTGAATCCATCAATGGTCACTCCCCATTCTTCCTTCCCCCCAGCCCCTGGAAATCACTAATCTGCTGTCTGTCACTGTAGATTTGACTATTCTGAGTAGTTCATATGAGTGGAATCACACAAAATGTGACCGTCTGTGTCTGGTTTCTTTCACTTAATGTGTTCAAGAATTATCCATATTTCAGCATGTATCAATACTTCACTCCTTTCAATGGCTGAATAGTGTTACCTTGTTTGGAATTGTATGCCATATCTTGGTTATCCATTCATCAGTTGATGGACTCCTGGGTTGTACCTTTCGGCCACGTGAATAATACCATGAATACTAATGTTCAAGTTTTTGTTTAAGTTTTAGTTCTTTGAAGTTTCAGTTTCACCTAGTTTCAGTTCTTTGAAGTATATACCTAGTAGTGAAATTCAAGGGTCATAAGCTCTACCTCTGTGTTTAACTTTTTAAAAAACTTTCTGAGGTACTTCCATTCTAGGTGCCATAAATTGGTATCTCATGGTGGGTTTGATTTGCATTTCCCCAATGACTGTAATGATATTAAGCATCTTTTCATTTGCTTATTGGCCATTTATTTATTTATTTGGAGAAATGTCTACTAAAGCCTTTGCCCATTTTTCAGTTGGGTTGCTTATCTCTTTGTAGTTTTGTGTATTCTAGATTGTAGATCCTTATCAAGTATATGATTTGCAAAAAACTTTCTCCCAGTTCTGTGCATTCTCTTTCCCCTTTGTTGATAGTGTCCTTTGATGCACAAAAGTTTTGAATTCTGATGAAATTCAGTGTCTCTGTATTTTCTTTAGTTGTTATGCTCTTGATGTCATATTTTAAAAAGCATTGCCTGGGATTTACACCTGTTTCCTTCTGAGAGTTTCTTACATTAGTTCTTACATAATTATACATTAGGTCTTTGATACATTTTGAGCTAATTTTTAGATGGTGTGAGATAGAGGTCAGATTCATTCTTTTGCATGTGAATATTCAATTGTCCAGCACCATTTGTTGAAATGACCATTATTTCCCCATTGAATAGTCTTGGCACCTTTGTCAGAAATCAACTGACCGTAGATATATGGGATTATTCCTAGACTCTCACTTCTATTTCATTGGTCTGTGCATGTATCCTTATGCCAATACCACAATGTCTTAGTTAGTATAGCTTTGTAGGAAGTTTAAAAGAATATTTATTTATTTATTTGGGTGTGCCAGTTCTTAGTTGAGGCTTTGGGATCCAGTCCCCTGAGCAAGCCTGGGCCCCTGCCTTGGGAGCATGGGGCTTTCTGCCACTAGACCACCAGGGAAGTCCCTGTAGTAAGTTTGGAAATCAAAGAATGTGAGCCCTCCAACTCTTTTTTGTTTGTTTTCAAGACTGTTTTGCCTGTTCCAGGTCACTTTCATTTCCCTGTAAACTCTAGGGTCAGCTTGCCCCTTGCACTCTTTATTCTTCTGATATGCTGCATCACTGCAGTGCAGTTTGACACTAAGGATGGAGCCAGTGCACGCTTCACACGCTACAGGCACAGTGCCCCACAGACTGCGGCCGTGTCAGAAAACGGCCGCGAGCCTGGGCTCCCAACAGAGCACTGCCCACAACCCGCCTACAAAGTTAGGAGTTCCCACTGACTCCTCAGCTTCACTAATTCGCTAGAAGGACTCACAGAACTCAGGATTATAGTATATATTATATGTATATATTATAAAGGATACATAAATCAGTACCAGTAAAAGAAGAGACATGCAGGGTGATGTCTGGGAGGGTCCCAAATGAAAAGCTTCCATGTCTTAAGAATGTGTCACCCTCTTGGCGCATCACTGTATAGAGGGTAGCTCACCTAAGTTTCACCTAAGTGTCTAGTTTTTTTTTTTTTAACTTTACAATATTGTATTGGTTTTGCCATATATCAACATGAATCCACCACAGGTATACACGTGTTCCCCATCCTGAACCCTCCACCCTCCTCCCTCCCCGTACCATCCCTCTGGGTTGTCCCAGTGCACCAGCCCCAAGCATCCAGTATTGTGCATCGAACCTGGACTGGCAACTCGTTTCACATATGATGTTATACATGTTTCAGTGCCATTCTCCCAAATCATCCCCCACTCCCTGTCCCACAGAGTCCAAAAGACTGTTCTATACATCAGTGTCTCTTTTGCTGTCTTGTATACAGGGTTATCGTTACCATCTTTCTAAATTCCATATATGTGTGTTAGTATACTGTATTGGCAGAGAAGGCATTGTCACCCCACTCCGGTACTCTTGCCTGGAAAATCCAGGGACGGAGGAGCCTGGTAGGCTGTAGTCCATGGGGTCGCTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGAAGTCGTACAGAGTCGAACACGACTGAGGTGACTTAGCAGTAGCAGCAGCATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATCGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATGGTGTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCTGCTATGAACAGTGGGGTACACGTGTGTCTTTCAATTCTGGTTTCCTCAGTGTGTATGCCCAGAAGTGGGATTGCTGGGTCATATGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTGCATTCCCACCAACAGTGTAAGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTTTTGCCTGTAGACTTTTGGATCGCAGCCATTCTGACTGGCGTGAAATGGTACCTTATAGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTCTTTGGAGAAATGTCTGTTTAGTTCTTTGGCCCATTTTTTGATTGGATCATTTATTTTTCTGGAATTGAGCTGTAGGAGTTGCTTGTATATTTTTGAGATTAGTTGTTTGTCAGTTGCTTCATTTGTTGTTATTTTCTCCCATTCTGAAGGCTGTCTTTTCACCTTGCTTATAGTTTCCTTTGTTGTGCAGAAGCTTTTAAATTTAATTAGGTCCCATTTGTTTATTTTGCTTTTATTTCCAATATTCTGGGAGGTGGGTCATACAGGATCCTGCTTTGATGTATGTCAGAGAGTGTTTTGCCCATGTTCTCCTCAAGGAGTTTTATAGTTTCTGGTCTTACGTTTAGATCTTTAATCCATTTTGAGTTTATTTTTGTGAATGTTGTTAGAAAGTATTCTAGCTTCATTCTTTTACAAGTGGTTGACCAGTTTTCCCAGCACCACTTGTTAAAGAGATTGTCTGTAATCCATTGTATATTCTTGCCTCCTTTGTCAAAGATAAGGTGTCCATAGGTGCGTGGATTTATCTCTGGGCTTTCTATTTCGTTCCATTTAAGTGTCTAGTTTTTATTGGAGTTTCATTACATAGGTTCATGAGTGAATCATGAACCTCGTGACTAAACTTAATCTGCAGTCTCTCCCTCCTGGCAGATCGGGAGATCAGATTGATAACCTGGCTCAAAGCCCCAACTCTCAAACTACATGGTTGATCTTTCTGATATGACCAGCCAGGATCTTGAACACTTCAATAGCAGGTGTACTCAGTACCTGAGGTAGTACTCAGGTACTACCAGGAGTAACAAAGACATACCATCCCTCCAAGGATTTAGAGGCTCCTCCCAGTAACTGGGGACAGACACCAGGCAGATTCTTTATTATTTAATACATACAATGATTCTTAATATATGGAACCTTTATTCCTGGAATAAATCCCATTTGGTCATGGTGTATAACCCTTTTAATATGCTGTAGTAGCTGGGCTGGAAGAAGCACAAGCTGGAATCAAGACTGCCGGGAGAAATATCAATAACCTCAGATATGTAGATGACACCACCTTTATGGCATAAAGTGAAGAAGAACTAAAAAGCCTCTTGATGAAAGTAAAAGAGGAGAGTGGAAAAAGTTGGCTTAAAGCTCAACATTCAAAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTAATTTTTTGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGACGCTTGCTCCTTGGAAGGAAAGTTATACCAACCTAGATAGCATATTGAAAAGCAGAAACATTACTTTGCCAACAAAAGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATATGAGAGTTGGACTGTGAAGAAAGCTGAGCACCGAAGAACTGATGCTTTTGAATTGTGGTGTTGGAGAAGACTCTTGAGAGTTCCTTGGACTGCAAGGGGATCCAACCAGTCCATTCTAAAGGAAATCAGCCCTGGGTGTTCTTTGGAAGGACTGATGCTAAAGCTGAAACTACAATACTTTGGCCACCTCATGAGAAGGGTTGACTCATTGGAAAAGACTCTGATCTTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGAGTGAACTCCGGGAGTTTGTGACGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTTGCAAAGAGTCGGGCATGACTGAGCGACTGAACTGAACTGAACTGAACTTAGTATTAATAAGTCATTTTTTTAGATGGTTCAAGATGAAAAAGCCAGGTCTTCCCTGGCAGTCAAGTGGTTAAGACTCTGCCCTTTCACTACCAAGTGCCCAGGTTCAATCCCTGGTCAGGGAACTAAGATCCCACACGCCTCACAGCTTGTGGAAAAAAAAGATGCAAAAGCCTTGTATCCCTTTCCCTGAAGGTAGTAAGTTTACTGTGTATCTTTCTCATGTGTAGTTTATGTATATATAATACCCCCCCTTATTTGTGGGGGATTTGCTCCAAGACCACCAGTGGATGCCTGAAATCTCAGATAGTTCCAAAGTCTATATGTCCTCTGTTTTTTTTCCTGTACATGCAACCTATGACAAAGTTTAATTTATAAATTAAGCACAGCAAGACATTAACAATAATCAATAAAATAGAACAATTATAACAATATACTGTAATAAAGGAGCTTCCCTGATGGCTCAGATGGTAGAGAATCTGCCTGCAATGCAGGAGACCCAGGTTCAATCCCTATGTCAAGAAGATTCCCTGGAGAAGCAGATGGCCACCAACTGCAGTATTCTTGCCTGGAGGATTCCATGGACAGAGGAGCCTGACGGGCTGTAATAAAAGTTACGTGAATGTGATCTCTCCCTCTCACAATATTTTATTGTACTGTACTTAAAGATGGCACTGTGGTAAAGAATCCATCTGCCAATGCAGGAGATACAAGAGACATGGGTCTGATCCCTGTGTCAGGAAGAACCCCTGGAGGAGGACATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGATGGCTACAGTCCGTGTAGTTGCAAAGTTGGACACGACTGAAGCTACTTAGCACGCACGCACCGTTCTTGTGATTTCAGATGGTAAGATGCCCATGTGATGAGATGAAGTGAGGTGAAGGATTTCAGGCATTGTGACACAGCTTTAGGCTGTTGACCTTCTGATGATTCATCAAAAGTAGGATCCAGGCTCCAGGTGATCCTGGATCATCAGGTCATGGAAGTGTTGATGGTTGGATGTCAAAAGCAGACGATGTCAGTGGGTAGGGATCCTGAGCAGGACAGAGCAGTATGGCACATGATTTCAGAGTTCAAGACACTCAGAATGGTGTGCACAATTTAAAACTTAGAATTTTATTTCTGGTAATTTTTTATTTAATGTTTTCAGACCATGCTTCACTGTGGGTAGTGGGTAACTAAAACTGTGGAAAGAAAAATCTCAGATAAGGGAGATAAGGGGTTACTGCTCTACAAGCAAAATGCTTGTTGGGCGCTCCCTGGCCCCGTTGGAAGCCCTGGCCGGATCTCCATCCCTGCCGTTTCAG
Seq C2 exon
CTGAAAGGCTTGCCGCGTCAGAAGTGCCCTGAGGAGGTCAAACGCATGCTGCACGTGCTCGGGCTGGAGGAGAAGCGGGATTCCCGGAGCAGGTTTCTGAGCGGCGGGATGCGGCGCAAGCTCTCCATCGGCATTGCCCTCATCGCGGGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643:ENSBTAT00000037495:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]