MmuEX1002868 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24300835-24307600:-
Coord C1 exon
chr17:24307446-24307600
Coord A exon
chr17:24303392-24303618
Coord C2 exon
chr17:24300835-24300941
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCCCTTCTTCCCAGTTA
3' ss Score
8.71
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTCTCATTACTCCATCAAAAGGACATGCATATATCCATGGATGTGAAATTTCAAAAGACATGGTTCAAATTAGGAAGAGCCTGGGCTGGTGCCCACAGCATGACATTTTATTTGATAACTTTACAGTAACTGACCACCTTTATTTCTACGGTCAG
Seq A exon
TTAGTCTGGATGGTTTATTTTTGTGACTCTTCCTAGAAGGTTACCTACGTGGGTTTTGGTGTTGGTGTTGAATGAACTTGCTGGAGCAATTACATCTTGGCTGTGTGCCAGTAGCCCTAAGGGCAGGCTGTACACTAAGCCAAAGGCAGCCAGGTGGAGGCAAAACCTTGGCCATCCCTCGAAATCTTGTAATTCTGGGAAAAGGACATCAAACACCAGAAGCCAAG
Seq C2 exon
AAAAGTGTTGATTTGCCAGGCCGTAGTGGCACACAGCTTTGATCCCGGCACTAAGGACCCAGAGGCAGACAGATCTCTGTGAGTGCGAAGCCAGCCTGGTTTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'16-29,'16-28,17-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
PF0000522=ABC_tran=PD(6.6=50.0)
C2:
PF0000522=ABC_tran=PD(8.6=57.1)
Main Inclusion Isoform:
ENSMUST00000121226fB5135
Main Skipping Isoform:
ENSMUST00000121226fB5136
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATTACTCCATCAAAAGGACATGC
R:
TCTGTAAACCAGGCTGGCTTC
Band lengths:
260-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types