MmuEX0002966 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24265204-24266034:-
Coord C1 exon
chr17:24265864-24266034
Coord A exon
chr17:24265423-24265613
Coord C2 exon
chr17:24265204-24265277
Length
191 bp
Sequences
Splice sites
3' ss Seq
GGCCTCCACCCTTTCCCCAGTAT
3' ss Score
6.38
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGGTGGTAACAAGCGCATGCTAAGCACTGGCATTGCCCTCGTTGGAGAGCCTGCAGTCATCCTGCTAGATGAACCGTCCACTGGCATGGACCCTGTGGCTCGGCGCCTGCTGTGGGACACTGTGGAACGGGTCCGTGAGTCTGGCAAGACCATCGTCATCACCTCCCACAG
Seq A exon
TATGGAGGAGTGTGAAGCCTTATGTACCAGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCACAGCACCTCAAGAGCAAATTTGGCATCAGCTACTCCCTGCAGGCCAAGGTCCGGAGGAAATGGCAGCAGCAGATGCTAGAGGAGTTCAAGGCCTTTGTGGACCTGACCTTCCCAG
Seq C2 exon
GCAGCAATTTGGAAGACGAGCACCAAAACATGCTTCAATATTACCTGCCTGGCCCAAACCTCAGCTGGGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTAAGCACTGGCATTGC
R:
CTTCGCCCAGCTGAGGTTTG
Band lengths:
230-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types