RnoEX0004818 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13630865-13631626:-
Coord C1 exon
chr10:13631456-13631626
Coord A exon
chr10:13631068-13631258
Coord C2 exon
chr10:13630865-13630938
Length
191 bp
Sequences
Splice sites
3' ss Seq
GGCTTTCTCCTCTTCCCCAGTAT
3' ss Score
7.57
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGACGGCAACAAGCGCGTGCTGAGCACCGCCATCGCCCTCCTCGGAGAGCCCACGGTCATCCTGCTAGACGAGCCATCCACTGGCATGGACCCTGTGGCTCGGCGCCTGGTGTGGGATGCTGTGGGACGGGTCCGTGAGTCTGGCAAGACCATCGTCATCACCTCTCACAG
Seq A exon
TATGGAGGAGTGTGAAGCCTTATGTACCCGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCGCAGCACCTCAAGAGCAGGTTTGGCAGCGGCTACTCCCTGCAGGCCAAGGTCCGGAGGAAATGGCAGCAGCAGATGCTAGAGGAGTTCAAGGCATTTGTGGACCTGACCTTCCCAG
Seq C2 exon
GCAGCAGTTTGGAGGACGAGCACCAAAGCATGGTTCAGTACTACCTGCCGGGCCAAAACCTCAGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'43-49,'43-48,44-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCCTCCTCGGAGA
R:
CTTGGCCCAGCTGAGGTTTTG
Band lengths:
215-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]