DreEX6015415 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12540271-12541609:+
Coord C1 exon
chr3:12540271-12540441
Coord A exon
chr3:12541257-12541453
Coord C2 exon
chr3:12541536-12541609
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCTCTGTCTGCAGTAT
3' ss Score
11.41
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
TGGTGGCAATAAAAGAAAGTTGAGCGCAGGCATGGCTCTGATTGGTGGTCCGCCTGTGATCTTCCTGGATGAACCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGTTGTGGGATGCAATCACGCGCACCAGAGAGTCTGGCAAAGCCATCATTATAACCTCACACAG
Seq A exon
TATGGAGGAGTGTGAGGCGCTGTGCACTCGTCTGGCTGTGATGGTGAACGGTCAGTTTAAGTGTCTGGGCAGCCCACAGCACCTGAAGAGCAAGTTCGGCAGCGGGTACACACTTCTGGCTAAAGTGCGTGTGGAGACGGAGCTGGAGGAGAGTGACCTGCAGCTCTTCAAAGACTTCATTGAGAGCACTTTTCCAG
Seq C2 exon
GAAGTTTACTGAAGGATGAACACCAGGGCATGGTCCACTATCACCTGACAGATAAAACACTGACCTGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATAAAAGAAAGTTGAGCGC
R:
CTGTGCCCAGGTCAGTGTTTT
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]