GgaEX1005380 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14335201-14335815:-
Coord C1 exon
chr14:14335645-14335815
Coord A exon
chr14:14335360-14335547
Coord C2 exon
chr14:14335201-14335274
Length
188 bp
Sequences
Splice sites
3' ss Seq
AATTCCCTCCCGTCCCACAGCAT
3' ss Score
8.11
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
TGGTGGTAACAAGCGGAAGCTGAGCGCTGGCATCGCCCTCATCGGTGGCCCCCCCGTCATCTTCCTGGATGAGCCCTCCACTGGCATGGACCCCGTGGCCCGGCGTCTGCTCTGGGATGCAGTGACCCGCACGCGGGAGTGTGGCAAATCCATCATCTTCACCTCCCACAG
Seq A exon
CATGGAGGAGTGCGAGGCGCTGTGCACGCGGCTGGCCATCATGGTGAACGGGCAGTTCAAGTGCCTGGGCAGCCCCCAGCACCTGAAGAGCAAGTTTGGCAGTGGCTACACCTTGCTGGCCAAAACGCGGACTGATGAGGAGGGCGAGCTGCAGGCCTTCAAGGCCTTTGTGGAGAAGACTTTCCCAG
Seq C2 exon
GCAGTGTCCTGAAGCACGAGCACCAGGGCATGGTGCACTACCACTTGACCAACAAGAACCTCAGCTGGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCCTCATCGGTG
R:
CCCAGCTGAGGTTCTTGTTGG
Band lengths:
211-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]