RnoEX0004855 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13778390-13779193:+
Coord C1 exon
chr10:13778390-13778560
Coord A exon
chr10:13778910-13778982
Coord C2 exon
chr10:13779120-13779193
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCAGCGGCTACTCCCTGCAGGCC
3' ss Score
5.25
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGGTGGTAACAAGCGCAAGTTAAGCACTGGCATCGCCCTCATTGGAGAGCCTGCAGTCATCTTCCTGGATGAGCCATCTACTGGCATGGACCCCGTGGCCCGGCGCCTACTCTGGGACACTGTAGCCCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCACCTCCCACAG
Seq A exon
GCCAAGGTCCGGAGTGAGGGGAAGCAAGAAGTACTAGAGGAGTTCAAGGCATTTGTGGACCTGACCTTCCCAG
Seq C2 exon
GCAGCGTCCTAGAAGATGAGCACCAAGACATGGTCCACTACCATCTGCCTGGCTGTGACCTCAGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'42-54,'42-53,43-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGCAAGTTAAGCACTGG
R:
GCTCATCTTCTAGGACGCTGC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]