MmuEX6075624 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24281220-24287949:-
Coord C1 exon
chr17:24287730-24287949
Coord A exon
chr17:24285616-24285774
Coord C2 exon
chr17:24281220-24281407
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGTTCTCATTGCAGATC
3' ss Score
11.93
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TTGGTGTTTCTGTGGTATAAGGAAGAGGCTTTTGCACACCACGAGAGCATCCCAGCGGTGGTCTTGATAATGATGCTCTACGGCTGGGCTGTCATCCCTTTGGTGTACACGGTCAGCTTCTCCTTTAACACTCCTGGCAGTGCATGTGTGAAGCTCGTGGTGATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACCGTCACCAGTGAGAAAG
Seq A exon
ATCTTGGCTACACGGAACTCTCAGACTCCTTGGATCATATTTTCCTAATTCTTCCTGGACATTGCCTGGGAATGGCCTTGTCCAACTTGTACTATAACTTTGAGCTGAAAAAGTTTTGCAGTGCTAAGAACTTGAGTGATATTGACTGCAATGATGTTT
Seq C2 exon
TAGAAGGATATGTGGTCCAAGAGAACATCTACGCCTGGGAATCTCTGGGGATAGGAAAGTACCTGACAGCCCTGGCCGTCTTAGGACCTGTGTACATCACCATGCTTTTCCTCACTGAAGCCAATGCATTCTATGTACTGAAATCCAGGCTCTCTGGCTTCTTCCCTTCCTTCTGGAAGGAAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'29-47,'29-46,31-47
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.1=100)
A:
PF126982=ABC2_membrane_3=FE(13.2=100)
C2:
PF126982=ABC2_membrane_3=PD(9.2=58.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCACACCACGAGAGCAT
R:
TATCCCCAGAGATTCCCAGGC
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types