MmuEX6075624 @ mm9
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24418165-24424894:-
Coord C1 exon
chr17:24424675-24424894
Coord A exon
chr17:24422561-24422719
Coord C2 exon
chr17:24418165-24418352
Length
159 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGTTCTCATTGCAGATC
3' ss Score
11.93
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TTGGTGTTTCTGTGGTATAAGGAAGAGGCTTTTGCACACCACGAGAGCATCCCAGCGGTGGTCTTGATAATGATGCTCTACGGCTGGGCTGTCATCCCTTTGGTGTACACGGTCAGCTTCTCCTTTAACACTCCTGGCAGTGCATGTGTGAAGCTCGTGGTGATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACCGTCACCAGTGAGAAAG
Seq A exon
ATCTTGGCTACACGGAACTCTCAGACTCCTTGGATCATATTTTCCTAATTCTTCCTGGACATTGCCTGGGAATGGCCTTGTCCAACTTGTACTATAACTTTGAGCTGAAAAAGTTTTGCAGTGCTAAGAACTTGAGTGATATTGACTGCAATGATGTTT
Seq C2 exon
TAGAAGGATATGTGGTCCAAGAGAACATCTACGCCTGGGAATCTCTGGGGATAGGAAAGTACCTGACAGCCCTGGCCGTCTTAGGACCTGTGTACATCACCATGCTTTTCCTCACTGAAGCCAATGCATTCTATGTACTGAAATCCAGGCTCTCTGGCTTCTTCCCTTCCTTCTGGAAGGAAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'23-26,'23-25,25-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.1=100)
A:
PF126982=ABC2_membrane_3=FE(13.2=100)
C2:
PF126982=ABC2_membrane_3=PD(9.2=58.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCACACCACGAGAGCAT
R:
TATCCCCAGAGATTCCCAGGC
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: