MmuEX6075614 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24313191-24318328:-
Coord C1 exon
chr17:24318156-24318328
Coord A exon
chr17:24317114-24317239
Coord C2 exon
chr17:24313191-24313320
Length
126 bp
Sequences
Splice sites
3' ss Seq
TAAGTTAACTTCTCGTGCAGAAG
3' ss Score
4.57
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCACAGGCATCCAATGGAGGAACATAGGCAGTGTCTGGGGAGACTTCAGCTTTGCTCAGGTGCTGGGGATGCTCTTGCTGGACTCCTTTTTGTACTGTCTGATAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGTTTGGAATACCTAAGTCTTGGTACATCTTTGCCAAG
Seq A exon
AAGCCCGTTCCAGAGATACCGCCACTTTTGAATATTGGGGATCCTGAGAAACCGTCAAAAGGGAATTTCATGCAGGATGAGCCAACAAATCAGATGAACACAATTGAAATCCAACATCTGTATAAG
Seq C2 exon
GTGTTCTATTCGGGAAGGAGTAAACGTACAGCCATCAGAGATCTGAGCATGAACCTGTACAAGGGGCAGGTCACTGTTCTTCTGGGACACAACGGAGCAGGGAAGACCACCGTCTGCTCTGTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(16.6=63.8)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCTTTGCTCAGGTGCT
R:
GTCAGAACAGAGCAGACGGTG
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types