DreEX6015427 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12495692-12501140:+
Coord C1 exon
chr3:12495692-12495873
Coord A exon
chr3:12500711-12500857
Coord C2 exon
chr3:12501011-12501140
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTCCACATATCTGTTTTCAGCCC
3' ss Score
7.46
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GCACGGGCATTCAGTGGCACAACCTGTTTGAAGCGGTGACGGTGGATGATGACTTCTCTCTGGCGCAGGTCATAGGTCTGCTGCTGCTAGATGCTCTTTTGTACGGCCTCGTGGCCTGGTATGTCGAAGCCGTGTTTCCAGGAGAGTATGGAGTCCCTCAACCCTGGTACTTCTTTATTCTG
Seq A exon
CCCTCGTACTGGTGCAGCAGTCCCCGTGTGGCCTTTCTGAAGGAAAAGGAGGATGAAGAGGATGCAGAGAAAGCCTCAAAGGGTGAATTTATGGAAGAGGAGCCAGCTGGACTAGTCGCGGGGGTCAAGATCAAGCGTTTGGCAAAG
Seq C2 exon
GTGTTCAAAGTGGGAAATAAGAGCAAGGAGGCGGTGAGGGATTTAACGCTCAACATGTTTGAAGGGCAGATCACTGTCCTGCTTGGGCACAATGGAGCCGGCAAGACCACCACACTGTCAATGCTGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.117 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(9.0=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTCTGGCGCAGGTCATA
R:
TTGACAGTGTGGTGGTCTTGC
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]