RnoEX6046400 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13753974-13756641:+
Coord C1 exon
chr10:13753974-13754155
Coord A exon
chr10:13755945-13756088
Coord C2 exon
chr10:13756512-13756641
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCCATCTACCTCCATCCCAGCCC
3' ss Score
5.32
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCACTGGCATCCAGTGGTGTGACCTCCTGAACCCTGTCAACGTAGATGATGATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGATTCAGTACTCTATGGCCTGGTGACCTGGTACGTGGAGGCCGTCTTCCCAGGCCAGTTTGGCGTGCCCCAGCCCTGGTACTTCTTCCTTATG
Seq A exon
CCCTCCTACTGGTGTGGGAACCCAAGAACGGTCGTAGGGAAGGAAGAGGAAGGCGGCGACCCAGAAAAGGCTTTCAGAACCGAGTACTTTGAAGCTGAGCCGGAGGACTTGGCAGCTGGGATCAAGATCAAGCACCTGTCCAAG
Seq C2 exon
GTGTTCCAAGTGGGTAATAAGGACAAGATGGGCATCAGAGACCTGACGCTGAACCTGTATGAAGGACAGATAACAGTCCTCCTGGGCCACAACGGTGCTGGGAAGACCACGACCATGTCTATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'16-17,'16-14,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCCTGAACCCTGTCAA
R:
GGCCCAGGAGGACTGTTATCT
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]