GgaEX1005371 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14344732-14346975:-
Coord C1 exon
chr14:14346794-14346975
Coord A exon
chr14:14345440-14345586
Coord C2 exon
chr14:14344732-14344861
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTTCTCCTGTCAGCCC
3' ss Score
8.86
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GGACTGGCATTCAATGGAGGGACCTCATGAAACCTGTCAGTGTGGACGACAACTTCACCTTGGCACAAGTCCTGGGGATGCTGCTCCTGGACTCGGTGCTCTATGGCCTGGTGGCCTGGTACGTGGAGGCTGTCTTCCCAGGAGAGTACGGCGTGCCGCAGCCCTGGTACTTCTTCCTGACG
Seq A exon
CCCTCGTACTGGTGTGGGCAACCCAGGACTGTCATTGGGAAAGAGAAGGAGGAGGAGGAAGACCCCGAGAAAGCCCTGAAGAGCCAATACATCGAGGAGGAGCCTGCTGACCTCGTGTCGGGGATCAAAATCAAGCACCTTTCCAAG
Seq C2 exon
GTCTTCAAAGTGGGAAGCAAGACTAAAGAGGCAGTGAAGGACTTGACGGTTAACATGTACGAAGGGCAGATCACCGTCCTGCTGGGACACAACGGTGCTGGGAAGACCACCACTCTGTCCATGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(13.4=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACAACTTCACCTTGGCA
R:
GACAGAGTGGTGGTCTTCCCA
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]