MmuEX6075642 @ mm9
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24518844-24521521:+
Coord C1 exon
chr17:24518844-24519025
Coord A exon
chr17:24520845-24520988
Coord C2 exon
chr17:24521392-24521521
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCCATGTGCCTCCATCCCAGCCC
3' ss Score
5.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGACTCAGCACTCTATGGCCTGGTGACCTGGTACGTGGAGGCTGTCTTCCCAGGCCAGTTTGGCGTACCCCAGCCCTGGCACTTCTTCCTTATG
Seq A exon
CCCTCCTACTGGTGTGGGAACCCAAGAACTGTCGTAGGGAAGGAAGAGGAAGGCAGCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTCCAAG
Seq C2 exon
GTGTTCCAAGTGGGCAATAAGGACAAGATGGGCATCAGAGACCTGACCCTGAACCTCTACGAAGGACAGATAACAGTCCTCCTGGGCCACAATGGTGCTGGGAAGACCACGACCATGTCTCTGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'16-20,'16-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTTTGGACAAGTGCTGG
R:
GTCAGCAGAGACATGGTCGTG
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: