GgaEX1005371 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13579349-13581592:-
Coord C1 exon
chr14:13581411-13581592
Coord A exon
chr14:13580057-13580203
Coord C2 exon
chr14:13579349-13579478
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCTTCTCCTGTCAGCCC
3' ss Score
8.86
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GGACTGGCATTCAATGGAGGGACCTCATGAAACCTGTCAGTGTGGACGACAACTTCACCTTGGCACAAGTCCTGGGGATGCTGCTCCTGGACTCGGTGCTCTATGGCCTGGTGGCCTGGTACGTGGAGGCTGTCTTCCCAGGAGAGTACGGCGTGCCGCAGCCCTGGTACTTCTTCCTGACG
Seq A exon
CCCTCGTACTGGTGTGGGCAACCCAGGACTGTCATTGGGAAAGAGAAGGAGGAGGAGGAAGACCCCGAGAAAGCCCTGAAGAGCCAATACATCGAGGAGGAGCCTGCTGACCTCGTGTCGGGGATCAAAATCAAGCACCTTTCCAAG
Seq C2 exon
GTCTTCAAAGTGGGAAGCAAGACTAAAGAGGCAGTGAAGGACTTGACGGTTAACATGTACGAAGGGCAGATCACCGTCCTGCTGGGACACAACGGTGCTGGGAAGACCACCACTCTGTCCATGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACAACTTCACCTTGGCA
R:
GACAGAGTGGTGGTCTTCCCA
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]