BtaEX6108003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1813257-1816059:-
Coord C1 exon
chr25:1815878-1816059
Coord A exon
chr25:1813867-1814010
Coord C2 exon
chr25:1813257-1813386
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATCGAGATTTCTGTTCTAGCCC
3' ss Score
4.86
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
GCACAGGCATCCAGTGGCGAGACCTCCTGAGTCCCGTCAATGTGGACGACGACTTCACCTTCGGGCAGGTGCTGGGCATGCTGCTGCTGGACTCCGTCCTCTACGGGCTTGTGGCCTGGTATGTGGAGGCCGTCCTCCCGGGCCAGTTCGGCGTGCCCCAGCCCTGGTACTTCTTCATCCTG
Seq A exon
CCCTCGTACTGGTGCGGACGCCCAAGGACGGCGCTCGGGAAGGAGGAGGAGGACGACGACCCTGAGAAGGTGCTCAGGACCGAGTACTTTGAAGCTGAGCCTGAGGACCTGGTGGCCGGGATCAAGATCAAGCACGTGTCCAAG
Seq C2 exon
GTGTTCAGAGTGGGGAACAAGGGCAAGGCGGCTGTCAGAGACCTGAACCTGAACCTGTACGAGGGCCAGATCACTGTCCTGCTGGGCCACAATGGCGCGGGGAAGACCACCACCCTCTCCATGCTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.271 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.9=65.6)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTCCTGAGTCCCGTC
R:
GACAGTGATCTGGCCCTCGTA
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]