RnoEX0004806 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13679795-13684881:-
Coord C1 exon
chr10:13684709-13684881
Coord A exon
chr10:13683642-13683785
Coord C2 exon
chr10:13679795-13679924
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAGGTTAACTTCTCGTGCAGTGT
3' ss Score
3.96
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCACAGGCATCCAATGGAGGAACATGGGCAGCGTCTGGGGCGACTTCAGCTTCACTCAGGTGCTGGTGATGCTCTTGCTGGACTCCTTCTTGTACTGCCTGGTAGCCTTTTTGGTGGAGTCTCTCTTCCCAAGAAAGATCGGAATGCCTAAGTCTTGGTACATCTTTGCCAAG
Seq A exon
TGTCCCCTCTGGCGCAAGAAGTCCTTTCCAGTAATACCGCCACTGTTGGTTATTGGGGATCCTGAGAAAACTTCTAAAGGGGACTTCCTGCAGGACGAGCCAGCAGGTCACATAAACGCCATCGAGATCCAGCATCTGTATAAG
Seq C2 exon
GTGTTCTATACAGGAAGGAGTAAATGCATAGCTGTCAAAGATCTGAGCATGAACCTGTACAAGGGACAGATCACAGTTCTTCTGGGACACAATGGAGCAGGAAAAACTACTGTCTGCTCCGTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'16-18,'16-15,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.3=63.8)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTTCACTCAGGTGCTG
R:
TGTCAGAACGGAGCAGACAGT
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]