BtaEX6108028 @ bosTau6
Exon Skipping
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1883332-1886666:+
Coord C1 exon
chr25:1883332-1883504
Coord A exon
chr25:1884464-1884607
Coord C2 exon
chr25:1886537-1886666
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGAGTTTACTTCCTCTCTAGCCC
3' ss Score
6.7
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GCACAGGCGTCCAGTGGAGGAACATGGGCCATATAGGAGGAGAGTTTAACTTCACTCAGGTGCTGCTGATGCTGCTGCTGGACTCTGTCTTATATGGCTTGGTGGCCTGGTATGTGGAGGCCATCTTCCCAGGAGAGTATGGTATACCCAAGCCCTGGTACTTCTTTCTCACG
Seq A exon
CCCTCCTACTGGTGGAGAGAACCTACATCCCTTAGGAATCCTGTGGAAGACTTAGAGGATCCTCAGCAAGCTCTGGGAAACAAGTTCATTCAGGATGAGCCTACCAATTTGATAAAAGGAATTGAAATCCAGCATCTATACAAG
Seq C2 exon
GTGTTCTACAAGGGAAGGGATGAGCATGTGGCAGTCAAAGACCTGACGGTGAACCTATACCAGGGCCAGATCACGGTTCTGCTAGGCCACAACGGAGCGGGCAAGACCACCACCTGCAACATCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.4=63.8)
A:
NO
C2:
PF0000522=ABC_tran=PU(22.1=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCACTCAGGTGCTGCTG
R:
ATGTTGCAGGTGGTGGTCTTG
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]