MmuALTA1027260-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24320974-24326473:-
Coord C1 exon
chr17:24326356-24326473
Coord A exon
NA
Coord C2 exon
chr17:24320974-24321074
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TACATGTACATCACTTTCAGCTA
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATAAACAGAGTGGCTGTGTTCAGGAACAGTAACCCTACCCTGATATTTATTTTTCTAATGTGTTTTGCCATCGCCACAATTTTCTTTGCATTCATGATGAGCACATTCTTCCAAAGAG
Seq A exon
NA
Seq C2 exon
CTACCACCAGAGGACTTACACCCAGAAGATACTCTCTTGCCTCTTCTCCAATGTTGCCATGGCAACGGGAGTCCGGTTCATATCTCTGTTTGAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-10-18,10-17,10-16-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGCTGTGTTCAGGAAC
R:
GGCAACATTGGAGAAGAGGCA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types