MmuEX0002968 @ mm10
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24291553-24296362:-
Coord C1 exon
chr17:24296264-24296362
Coord A exon
chr17:24295085-24295247
Coord C2 exon
chr17:24291553-24291859
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATGATTTTGGTTCGGTTTAGAGT
3' ss Score
6.92
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GTTTGAGGCTCTATTCAATGACTTGGAACTGAGACAGACAGAGCTGGGAATCTCTACTTTTGCCACCTCTGTAACCACTATGGAGGAAGTGTTCATACG
Seq A exon
AGTTTGTAAGTTGGCTGATCCCAGCACAAATGTCTTAACCGAGAAGCGACACTCTCTTCATCCTCTTCCCCGGCATCACAGAGTTCCTGTTGACAGAATTAAATGTCTCCACTCAGGGACCTTCCCAGTGAGCACTGAACAGCCAATGAGACTAAATACGGGC
Seq C2 exon
TTCTGTCTTCTCTGCCAACAATTCTACGCCATGCTCTTGAAAAAGATCACGTATTCTCGGCGCAACTGGATGCTGGTGCTCTCGGTGCAGGTTCTGCTGCCGCTGGCGATCATTATGTTAAGCCTCACCTTTTTTAACTTCAAATTAAGGAAACTGGATAACGTGCCACTGGAGCTGACTTTACAAACGTACGGCCAGACCATTGTTCCATTTTTTATTGCCGAGAATTCTCACCTGGACCCTCAACTTTCAGATGACTTTGTAAAAATGCTTGTGGCCGCAGGGCAGGTTCCTTTGCGTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(19.6=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACAGACAGAGCTGGGA
R:
CTCCAGTGGCACGTTATCCAG
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types