RnoEX0004810 @ rn6
Exon Skipping
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13660049-13666802:-
Coord C1 exon
chr10:13666704-13666802
Coord A exon
chr10:13663638-13663800
Coord C2 exon
chr10:13660049-13660355
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTTTTTGGTTTAGAGT
3' ss Score
8.92
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTTCGAAGCTCTATTCGCTGACCTGGAACAGAGACAGACAGAGCTGGGAATCTCTACTTTTGGGGCCTCCGTCACCACTATGGAGGAAGTGTTCATACG
Seq A exon
AGTTTGTAAGTTGGCTGATCCCAGCACAAATGTCTTAACTGAGAAGCGACCCTCTCTCCGTCATCTTCCCCGGAATCACAGAGTTCCCGTTGACAGAATTAAATGTCTCCACTCAAGGATCTTCTCATTGAGCTCTGACCAGCCGATAAGACTAAACACGGGG
Seq C2 exon
TTCTCTCTCCTGTGCCAACAATTCTATGCCATGCTCCTGAAAAAGGTCGCGTTTTCTCGGCGCAACTGGATGCTGGTGCTGTCTGTGCAGATTCTGCTGCCTCTGGTGATCATTATGTTAAGCCTCAGTTTTTTCAACTTCAAATTAAGGAAGCTGGATAACGTGCCCCTGGAGCTGACCTTGCAAACCTATGGTCAGACCATTGTTCCGTTTTTTATTGCCGAGAACTCCCGCCTGGATCCTCAGCTTTCAGATAACTTTGTAAAAATGCTCGTGGCTGCAGGACAGGTTCCTTTGCGTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(19.6=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAGACAGAGCTGGGAA
R:
GTTTGCAAGGTCAGCTCCAGG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]