HsaEX1001294 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr16:2395840-2406909:+
Coord C1 exon
chr16:2395840-2395938
Coord A exon
chr16:2404067-2404228
Coord C2 exon
chr16:2406603-2406909
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTGGTTTGGTTTAGGGT
3' ss Score
9.78
5' ss Seq
GGGGTAAAT
5' ss Score
4.46
Exon sequences
Seq C1 exon
GTTTGAATCTCTATTTACTGACTTGGAACTGAGGCAGGTAGAGCTGGGCATCTCCAGCTTTGGGGCCTCTGTCATGACCATGGAGGATGTCTTCATAAG
Seq A exon
GGTTTGTATGTTGGCAGATGCCAGTACAGCTGTCCCAAACATCAAACATCCCTCTATCCATCCCCAGCCCTGCTTAGCAGAATTCCTGTTGACAGAATTAAACATCTTCATTCGAGGACCTTCTCAATACGGACTGGGCTGCCAATCAAACCAAACACTGGG
Seq C2 exon
TTCAGTCTTCTCTGCCAACAATTTTATGCCATGCTCCTGAAAAAGGTCACATATTCTTAACACAACTGGATGTTGATGTTATCAATACAGATCCTGGTCCCTCTGGTGATCATCATGTTAAGCCTCACATTCTTCAACTTCAAAGAAAGAAGCATAGAAAATGTCCCATTGGAGCTGACTCTGAAAACATATGGTCAGACCATTGTTCCTTTCTTTATTTCTCAGAATTCCAGGCTGGATCCTCAACTTTCAGAACGCTTTGCAAATATGTTTATGGTTGAGGGACAGATTCCTCTGGAGGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238098_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGAGGCAGGTAGAGCT
R:
AGAGTCAGCTCCAATGGGACA
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains