MmuALTA1027745-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27079379-27081794:+
Coord C1 exon
chr2:27079379-27079573
Coord A exon
NA
Coord C2 exon
chr2:27081704-27081794
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GACGGGGTCTTGCTTCGTAGGAT
3' ss Score
7.56
Exon sequences
Seq C1 exon
ACTGGGCTGAGAGCCCCTCCTGGGAACCCCCTCCCTTGAATGCTCTTTGAAGTGGGAGAGGGAGGCAGCTGGGGAAGCAGGACCAGAGACAGGCAGAGCCCGCACATCTCTGCACTCACCTTCCTGCACCGTGCACCTGGCAGTAGCTCTCACCCTTTTCTCTAAAAGGAGGACAACCTGCTGACCCTGGGTGAG
Seq A exon
NA
Seq C2 exon
GATGGATGGCAGACGGCAGCATCCACACTGGGCTTGGTCCTTGCTGGCTGTAGCAGTTGTGGCTGGGGGTGCGGCACCTACGGAGGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGCCCCTCCTGG
R:
CACCCCCAGCCACAACTG
Band lengths:
261-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types