RnoALTA0002381-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5624506-5626492:+
Coord C1 exon
chr3:5624506-5624693
Coord A exon
NA
Coord C2 exon
chr3:5626402-5626492
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CACGGGGTCTCACTTCGTAGGAT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GGCTGAGCGCCCCTCCTGGGAACCCCTCCCTTGAATGCTCTTTGAAGTGGGAGAGGGAGGCAGCTGGGGGAAGCAAGACCAGAGACAGGCAGAGCCCGCACATCTCTGTACTCACCTTCCTGCACCGTGCACCTGGCAGCTAGCTCTCACCCCTTTCTCTGGGAGGACAACCTGCTGAGCCTGGGGAG
Seq A exon
NA
Seq C2 exon
GATGGACAGCGGATGGCAACGCTCACGCTGGGCTTGGTCTTTGCTGGCCATGGCAGTTGTGGCCGGGGGTGCGGCATCTACCGAGGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCCCTTGAATGCTCTT
R:
CGAAGCCTCGGTAGATGCC
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]