MmuALTA1028324-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25091721-25092624:-
Coord C1 exon
chr2:25092542-25092624
Coord A exon
chr2:25091830-25091936
Coord C2 exon
chr2:25091721-25091829
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTGACTGCTATTGCCTCCAGGTC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GCATTTGACCAAGCAGTGACTAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
Seq A exon
GTCTCCCAGAGCTGACACAGAGAGAAAGATGGGTGGAATATCCCAAAACACCCTTCAGAGGTTCAGCAACTCCTTTGTAGCTACTGAGAGACCCCTGATGCCCACAG
Seq C2 exon
GTTCCAGGAGGCTGTGTCTGACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTTCAAATTGCAAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-6-3,6-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.6=100)
A:
NA
C2:
PF134141=TPR_11=PD(22.9=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCAGTGACT
R:
TCCCAGGCTTGCAATTTGAAGT
Band lengths:
191-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types