HsaALTA1052569-5/5 @ hg38
Alternative 3'ss
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137426248-137428141:+
Coord C1 exon
chr9:137426248-137426330
Coord A exon
chr9:137427921-137428075
Coord C2 exon
chr9:137428076-137428141
Length
155 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCGCACTGCCCTCCCTCAGGTC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GCATTTGACCAAGCCGTGACCAAGGACACCTGCATGGCGGTTGGCTTCTTCCAGCGAGGAGTGGCCAACTTCCAGCTGGCAAG
Seq A exon
GTCTCCTTGGAACCAGGTGTTGGGGGCGGCTCGAGCGGGGCTGGTGTGAAAGCTGCCTAACCACAGCCCCATCTCCGCCCTGTGCTGCTGAGGGGACCCCGGCTGCCCACAGGTTCCAGGAGGCTCTGTCTGACTTCTGGCTGGCCCTGGAGCAG
Seq C2 exon
CTGAGGGGCCACGCTGCCATCGACTACACGCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-3-9,3-8,3-7,3-6,3-5-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(39.7=100)
A:
NA
C2:
PF134141=TPR_11=PD(23.5=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGACCAAGCCGTGACCAA
R:
CTCCCAGGCTTGCAGCTT
Band lengths:
147-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains