Special

HsaALTA1052569-2/5 @ hg38

Alternative 3'ss

Gene
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:HGNC:10668]
Coordinates
chr9:137426248-137428141:+
Coord C1 exon
chr9:137426248-137426330
Coord A exon
chr9:137428033-137428075
Coord C2 exon
chr9:137428076-137428141
Length
43 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGGACCCCGGCTGCCCACAGGTT
3' ss Score
5.99
Exon sequences
Seq C1 exon
GCATTTGACCAAGCCGTGACCAAGGACACCTGCATGGCGGTTGGCTTCTTCCAGCGAGGAGTGGCCAACTTCCAGCTGGCAAG
Seq A exon
GTTCCAGGAGGCTCTGTCTGACTTCTGGCTGGCCCTGGAGCAG
Seq C2 exon
CTGAGGGGCCACGCTGCCATCGACTACACGCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-3-9,3-8,3-7,3-6,3-5-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF134141=TPR_11=FE(39.7=100)
A:
NA
C2:
PF134141=TPR_11=PD(23.5=43.2)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGACCAAGCCGTGACCAA
R:
AGGCTTGCAGCTTGAACCG
Band lengths:
142-185
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains