MmuALTA1028324-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25091721-25092624:-
Coord C1 exon
chr2:25092542-25092624
Coord A exon
NA
Coord C2 exon
chr2:25091721-25091829
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GAGACCCCTGATGCCCACAGGTT
3' ss Score
5.53
Exon sequences
Seq C1 exon
GCATTTGACCAAGCAGTGACTAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
Seq A exon
NA
Seq C2 exon
GTTCCAGGAGGCTGTGTCTGACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTTCAAATTGCAAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-6-3,6-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(38.6=100)
A:
NA
C2:
PF134141=TPR_11=PD(22.9=43.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGACCAAGCAGTGACT
R:
TCCCAGGCTTGCAATTTGAAGT
Band lengths:
191-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types