MmuALTA1028335-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123485894-123486125:-
Coord C1 exon
chr1:123486073-123486125
Coord A exon
NA
Coord C2 exon
chr1:123485894-123485970
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTACATCTTTTCAAGGGAAGTGT
3' ss Score
-2.42
Exon sequences
Seq C1 exon
ATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGG
Seq A exon
NA
Seq C2 exon
TGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-16-24,16-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.6=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCATTACTCATTTACCGCTTCA
R:
CCGCATACTGCAACACTGAGT
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types