RnoALTA0012654-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002595 | Dpp10
Description
dipeptidylpeptidase 10 [Source:RGD Symbol;Acc:1306427]
Coordinates
chr13:39643067-39643328:-
Coord C1 exon
chr13:39643246-39643328
Coord A exon
NA
Coord C2 exon
chr13:39643067-39643143
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTACATCTTTTCAAGGGAAGTGT
3' ss Score
-2.42
Exon sequences
Seq C1 exon
TTGATTACTCTATTCTTTTTTTTATTTCAGATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACATACTGG
Seq A exon
NA
Seq C2 exon
TGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002595-3-5,3-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(6.9=89.3)
A:
NA
C2:
PF0093016=DPPIV_N=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCATTACTCATTTACCGCTTCA
R:
CCGCATACTGCAACACTGAGT
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]