MmuALTA1028363-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25010714-25011711:+
Coord C1 exon
chr2:25010714-25010791
Coord A exon
chr2:25011506-25011553
Coord C2 exon
chr2:25011554-25011711
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCCTTCTCTGCTTTTCTCAGGAT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GACCCATCCCTGTTGGATGGCCGGGTGGCATTTCTTCATGTTCCTGCAGGCACCTTAGTGTCAAAACAGGGAGATCAG
Seq A exon
GATGTCAATATTTTGTTTGTGGTCTCGGGGATGCTGCATGTGTACCAG
Seq C2 exon
CAAAAGATTGACAGCTTGGAGGATACTTGCCTGTTCCTCACACATCCCGGGGAGATGGTGGGTCAGCTGGCGGTGCTCACTGGAGAACCCCTAATGTTCACCATCAGAGCCAACCGAGACTGCAGCTTTTTGTCCATCTCGAAGGCCCACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-33-32,33-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGTTCCTGCAGGCAC
R:
TAGGGGTTCTCCAGTGAGCAC
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types