GgaALTA1024709-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1612892-1614011:+
Coord C1 exon
chr17:1612892-1612969
Coord A exon
chr17:1613806-1613856
Coord C2 exon
chr17:1613857-1614011
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTTGTCTCCATTTTCTCCAGGAT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GATCCTTCCCTGCTGAATGACAGAGTGACACTGCATCAGGTTACTGCTGGGACTGTGCTGTCAAGGCAGGGAGATCAG
Seq A exon
GATGTTAATGTTTGCTTTGTGGTCTCCGGGATGCTTCACGTGTACCAACAG
Seq C2 exon
AAGGTCGACTCCGAGGAGGACACCTGCCTGTTCATTACTCACCCAGGAGAACTCGTGGGCCAGCTTGCTGTTCTCACTGGGGAACCACTGATTTTCACCATCAAGGCCAATCGAGACTGTAGCTTCCTGTCTATTTCCAAGTCCCACTTCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-22-19,22-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGGTTACTGCTGGGAC
R:
AGTGGTTCCCCAGTGAGAACA
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]