DreALTA0020814-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062986 | pnpla7a
Description
patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
Coordinates
chr21:13544915-13545809:-
Coord C1 exon
chr21:13545732-13545809
Coord A exon
chr21:13545117-13545120
Coord C2 exon
chr21:13544915-13545116
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TGTGTGTGTGTTTCTTTTAGGAA
3' ss Score
12.71
Exon sequences
Seq C1 exon
GACCCCAGTTTGCTGGAGGGCAGAGTGACACTCCATCAAGTTAAAGCTGGATCTGTCGTAGCTCGCCAAGGAGATCAG
Seq A exon
GAAG
Seq C2 exon
TGAGTGTTCAGTTTGTGATCTCGGGCACGTTGCATGTATACCAGCGGATGATTGACCGAGAGGAGGACACATGTCTGTTCGTGGCTCACCCAGGAGAGCTGGTGGGTCAGTTGGCAGTACTGACTGGAGAACCTCTTATCTTCTCTGTACGGGCACATCGTGACTGCAGCTTCCTATCCATCTCTAAAACACACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062986-21-21,21-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTCGTAGCTCGCCAAG
R:
AGACATGTGTCCTCCTCTCGG
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]