MmuALTA1029539-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124725085-124726908:+
Coord C1 exon
chr5:124725085-124725380
Coord A exon
chr5:124726825-124726827
Coord C2 exon
chr5:124726828-124726908
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGTTATGGTTCCGGAAAGAAG
3' ss Score
-0.45
Exon sequences
Seq C1 exon
TAGGGTCGCCGTTGCCACGGACGCCCGCCCGGCTCCCTGCCCAGTCTGTTCTGCGCCCTGCGCTGCTCAGGTCTGCGCCATGGACGACCTGCGGGTCCTGTGGATGCGCGACCGCGTATACACTGCCTTCAACCTCACCAACCCTATGCTATTCGAGGAGATGCTGAGCCGTGATGACAGCGAGGCGGAGGACTGCATCTTGCACTTCCTCAACCACTTGAGTGACGAGGACAACGCCTCTGCGCTGTTCTTCTACCGCATACTGGTGCCTGAGGAGGTGGAGGTGGAGGAGCCAG
Seq A exon
AAG
Seq C2 exon
ACATTCCCTTGGTCTTTGATGAGGAGGGAGAGGAAGAGGAGAGTGACTATCAAAAAGTAGAGGCCACCGAAAAAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGCTGTTCTTCTACCG
R:
TCCTCTTCCTCTCCCTCCTCA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types