RnoALTA0005227-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37363906-37365198:-
Coord C1 exon
chr12:37364973-37365198
Coord A exon
chr12:37363986-37363988
Coord C2 exon
chr12:37363906-37363985
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
CCCTTCTTGGTCCCATTAAGAAG
3' ss Score
2.92
Exon sequences
Seq C1 exon
GTCTGCGCCATGGACGACCTACGGGTCCTGTGGATGCGCGACCGCATATACACGGCCTTCAATATCACCGACCCTATGCCGTTCGAGGAGCTGCTGAGCCGTGATGACAGCGAGGCAGAGGACCTCATCCTGCACTTCCTCAACCACTCAAGCGACGAGGACAACGCCTCCGCGGTGTTCTTCTACCGCACCCTGGTGCCTGAGGAGGTGGAGGTGGAGGAGATAG
Seq A exon
AAG
Seq C2 exon
ACATCCCCACGACCTTTGAAGAGGAGGGAGAGGAAGAGGAGAGTGAATATCAAAAAGTAGAGGTCACCGATAAAACGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-60-58,60-57-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCTACCGCACCCTG
R:
TCCTCTTCCTCTCCCTCCTCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]