RnoEX0013278 @ rn6
Exon Skipping
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37360220-37365198:-
Coord C1 exon
chr12:37364973-37365198
Coord A exon
chr12:37363905-37363985
Coord C2 exon
chr12:37360220-37360320
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGTCCCATTAAGAAGACA
3' ss Score
-2.02
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCTGCGCCATGGACGACCTACGGGTCCTGTGGATGCGCGACCGCATATACACGGCCTTCAATATCACCGACCCTATGCCGTTCGAGGAGCTGCTGAGCCGTGATGACAGCGAGGCAGAGGACCTCATCCTGCACTTCCTCAACCACTCAAGCGACGAGGACAACGCCTCCGCGGTGTTCTTCTACCGCACCCTGGTGCCTGAGGAGGTGGAGGTGGAGGAGATAG
Seq A exon
ACATCCCCACGACCTTTGAAGAGGAGGGAGAGGAAGAGGAGAGTGAATATCAAAAAGTAGAGGTCACCGATAAAACGGCAG
Seq C2 exon
TCAAGCCCTCAAAGCCGAAAAACGACTCCTTGACTCCCCCCCTGTTTGATATGGAAGATGATGAACCAGACATAGAGAACTACAGCAAACCATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704-'60-59,'60-58,62-59
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTATGCCGTTCGAGGAG
R:
TTTTCGGCTTTGAGGGCTTGA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]