HsaEX6069985 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123762188-123771698:+
Coord C1 exon
chr12:123762188-123762550
Coord A exon
chr12:123767606-123767689
Coord C2 exon
chr12:123771601-123771698
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCATTTATGTGGCCATAAAGATG
3' ss Score
2.77
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
CGGGCGCGGGGCACTGCCGAGCTTGCAGCCCCCAGCGCCGGCGCCGTCGGCGGGGCGAGCTGCGGCCGTTTCCGGGGCGCCCATTGCTAGGGCCGCCGTTGCCACGGACGCCCGCCCTGCGCCCGGCTCCCTCTGCACTGCGCGGCGCCATGGACGACCTGCGGGTGCTGTGGATGCGCGACCGCGTGTATGCGGCTTTCGGCATCACCGACCCCCAGCTTTTCGAGGACCTGCTCAACCGCGACGACGGCCAGGGCGAGGACCTCATCTTGCACTTCCTCAACCAGGCGAGCGAGGAGGAGGGGCCCTCGGCGCTCTTCATCTACCGCACTATGGTGCCGGAGGAGGTGGAGGTGGAGATTG
Seq A exon
ATGAGATACCTGTCCTGTCTGAAGAGGGAGAAGAGGAAGAAGAGACTTATTCTCAAAAAGTGGAGTCCGTGGATAAAGTGCGAG
Seq C2 exon
CTAAGCGTGTGTCACTGAGAACCGAATCTCTAGGCCAACCTCTAAACAGAGAGGATGAAGAAATGGACAAAGAGATTTCAGAAAAACTCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'0-2,'0-1,1-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.736 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCGAGGACCTGCTCAA
R:
GGTTCTCAGTGACACACGCTT
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains