HsaEX6069985 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124247042-124256245:+
Coord C1 exon
chr12:124247042-124247097
Coord A exon
chr12:124252153-124252236
Coord C2 exon
chr12:124256148-124256245
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCATTTATGTGGCCATAAAGATG
3' ss Score
2.77
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
CTCGGCGCTCTTCATCTACCGCACTATGGTGCCGGAGGAGGTGGAGGTGGAGATTG
Seq A exon
ATGAGATACCTGTCCTGTCTGAAGAGGGAGAAGAGGAAGAAGAGACTTATTCTCAAAAAGTGGAGTCCGTGGATAAAGTGCGAG
Seq C2 exon
CTAAGCGTGTGTCACTGAGAACCGAATCTCTAGGCCAACCTCTAAACAGAGAGGATGAAGAAATGGACAAAGAGATTTCAGAAAAACTCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.793 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCGCTCTTCATCTACC
R:
TGGAAGGGAGTTTTTCTGAAATCTCT
Band lengths:
152-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)