MmuEX6021105 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125205455-125209533:+
Coord C1 exon
chr5:125205455-125205750
Coord A exon
chr5:125207198-125207278
Coord C2 exon
chr5:125209433-125209533
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTATGGTTCCGGAAAGAAGACA
3' ss Score
-7.35
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TAGGGTCGCCGTTGCCACGGACGCCCGCCCGGCTCCCTGCCCAGTCTGTTCTGCGCCCTGCGCTGCTCAGGTCTGCGCCATGGACGACCTGCGGGTCCTGTGGATGCGCGACCGCGTATACACTGCCTTCAACCTCACCAACCCTATGCTATTCGAGGAGATGCTGAGCCGTGATGACAGCGAGGCGGAGGACTGCATCTTGCACTTCCTCAACCACTTGAGTGACGAGGACAACGCCTCTGCGCTGTTCTTCTACCGCATACTGGTGCCTGAGGAGGTGGAGGTGGAGGAGCCAG
Seq A exon
ACATTCCCTTGGTCTTTGATGAGGAGGGAGAGGAAGAGGAGAGTGACTATCAAAAAGTAGAGGCCACCGAAAAAATGTCAG
Seq C2 exon
TCAAGTTCTCAAAGCTGAGAAGTGACTCCATGACCCCCTCTCTATTTGATATGGATGACGAAGAGCCAGATGTAGAGACCTACAGCAAACTGTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.536 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGAGCCGTGATGAC
R:
GGGGGTCATGGAGTCACTTCT
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: