BtaEX6072191 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54191487-54199562:-
Coord C1 exon
chr17:54199532-54199562
Coord A exon
chr17:54194560-54194646
Coord C2 exon
chr17:54191487-54191587
Length
87 bp
Sequences
Splice sites
3' ss Seq
CGCTTTATGTGGCTGTAAAGATG
3' ss Score
2.89
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGGTGCCCGAGGAGGTGGAGGTGGAGATCG
Seq A exon
ATGATGACATTCCTGGCCTGTCTGAAGAGGAAGAAGAGGAAGAAGAGACAGAGTTTCAAAAAGTGGAGTCGATAGATAGAGCATCAG
Seq C2 exon
CTAAGAATCTGCAGCTGAGAATGTATTCTATACATCGTCCTCGCATCAGCCTTGAGGAGGAAGAGATGGACCTTGAGAGTATAGAGAACCTCCCCGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.800 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCGAGGAGGTGGAG
R:
TGACGGGGAGGTTCTCTATACT
Band lengths:
127-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]