MmuALTA1030918-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039236 | Isg20
Description
interferon-stimulated protein [Source:MGI Symbol;Acc:MGI:1928895]
Coordinates
chr7:78916533-78920146:+
Coord C1 exon
chr7:78916533-78916733
Coord A exon
NA
Coord C2 exon
chr7:78920046-78920146
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTCTCCCTGTGTCTGCAGAAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
ATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAG
Seq A exon
NA
Seq C2 exon
AACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039236-8-16,8-15,8-14-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=46.2)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCAGCTTCTGAAAGGC
R:
CTGGGCTCTGAGTCGCTGAG
Band lengths:
285-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types