MmuALTA1030918-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039236 | Isg20
Description
interferon-stimulated protein [Source:MGI Symbol;Acc:MGI:1928895]
Coordinates
chr7:78916533-78920146:+
Coord C1 exon
chr7:78916533-78916733
Coord A exon
chr7:78919712-78920045
Coord C2 exon
chr7:78920046-78920146
Length
334 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCTTCTCGTGTTTCCCAGGTC
3' ss Score
11.45
Exon sequences
Seq C1 exon
ATCCTGCAGCTTCTGAAAGGCAAGCTGGTGGTGGGCCATGACCTGAAGCACGACTTCAATGCCCTGAAGGAGGATATGAGCAAGTACACCATCTATGACACGTCCACAGACAGGCTGCTGTGGCATGAGGCCAAGCTGCAGTACTACAGCCGAGTGTCCCTGAGGCTGCTGTGTAAGCGCCTGCTACACAAGAACATCCAG
Seq A exon
GTCCTGCCTGGCAGCCTCTTGGGGGTTGGAGGATGCATCTTGCCAGGCACTGACATCCTTCATCTTCTGCTCTATGTCGGAATGGTCAGGATTGCTGATCTCCGCTTGCTGACGCCCTTTCTACCTCCGAGCTGCCTCGCTTGCCCACTGCTCCCGGAGAGTCTTGCTTCTGCTCGCTCGCACGCTGTTATTTCTGCCCTGTCCAGCTCTAGTCACCTGCTGACACCCCTCCCAAACCCGAGTCAGGGACCTCAGGGACACGTGGACAGACTGAGCGGCCAGCTCCAGGACTGGGGAGGCAGCCCCTTAGCTCCTGCTCTCCCTGTGTCTGCAG
Seq C2 exon
AACAACTGGCGGGGCCACTGCTCTGTGGAAGATGCCAGGGCCACAATGGAGCTCTACAAAATCTCTCAGCGACTCAGAGCCCAGCGAGGGCTGCCTTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039236-8-16,8-15,8-14-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.6=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.6=46.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCAGCTTCTGAAAGGC
R:
CCTCGCTGGGCTCTGAGT
Band lengths:
290-624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types