MmuALTA1031706-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:131316053-131316758:-
Coord C1 exon
chr7:131316608-131316758
Coord A exon
chr7:131316122-131316270
Coord C2 exon
chr7:131316053-131316121
Length
149 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CCAGAGGCTGTCTTTCTTAGACT
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTATTCCAAACTGCGGTGGTGACCTGCGAGCATTGGAAGGGTCCTTCAGCAGCCCCAATTATCCAAAGCCGCACCCTGAGCTGGCATATTGTGTCTGGCACATACAAGTGGGGAAAGGCTATAAGATACAATTGAAGTTTACAGATCTCTT
Seq A exon
ACTAGAGATGGATGAAAACTGCAAGTTTGATTTCATCGCAGTCTACGATGGCCCCTCCACCACGGCAGGCCTGCTCAAACAACTCTGCGGCCGTGGGAAGCCTACCTTAGAATCTTCCTCTGACGCCATGACTGTCGTGCTATCTACAG
Seq C2 exon
ATTATGCCAATTCCTACAAAGGCTTTTCTGCTTCCTACACTTCAATTTACATCCACGATGTCAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-7-8,7-7,7-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCAAACTGCGGTGGTGA
R:
CATCGTGGATGTAAATTGAAGTGT
Band lengths:
210-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types