RnoALTA0010856-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029945 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:RGD Symbol;Acc:619771]
Coordinates
chr1:201888629-201889171:-
Coord C1 exon
chr1:201889021-201889171
Coord A exon
chr1:201888706-201888710
Coord C2 exon
chr1:201888629-201888705
Length
5 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CCAGAGGCTGTCTTTCTTAGCCT
3' ss Score
1.93
Exon sequences
Seq C1 exon
CTATTCCAAACTGCGGTGGTTACCTGCAAACATTGGAAGGATCCTTCAGCAGCCCCAATTATCCAAGGCCACACCCTGAGCTGGCATACTGTGTGTGGCACATACAAGTGGAGAAAGGCTATAAGATAAACTTGAATTTTACAGAGCTCTT
Seq A exon
CCTAG
Seq C2 exon
AAATGGATGAATACTGCCGATTTGACTTCATCGCAGTCTACGATGGCCCCTCTACCACATCGGGCTTGCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029945-6-7,6-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGCATACTGTGTGTGG
R:
GCGATGAAGTCAAATCGGCAG
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]