MmuALTA1031924-1/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108458368-108459850:-
Coord C1 exon
chr3:108459685-108459850
Coord A exon
NA
Coord C2 exon
chr3:108458368-108458468
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TGTCACCATCTCTCTTTCAGAGG
3' ss Score
10.68
Exon sequences
Seq C1 exon
ATTAGAATACAAATACTCCAAGTTGGTAATGAACGCTACTCTTAAAGACTGCGACCTGCCGGCAGCAGACAGCTGTGCCATCATGGAAGGAGAGGACGTGGAGGATGACTTCATCTTTACCAGCAAGAAGTCCCTCTTTGGGAAGATCAAATCCTTTACCTCCAAG
Seq A exon
NA
Seq C2 exon
AGGACTCCTGATGGATTTGACTCGGTGCCGCTGAAGACGTCTTCAGGAGGCCCAGACATGGACATGTGAGAGGTGCCCGTCCTGCCTCGCCTGCCTCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-38-41,38-40,38-39,38-38-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGGAGAGGACGTGGAG
R:
GGCACCGAGTCAAATCCATCA
Band lengths:
113-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types