MmuALTA1031932-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:160950841-160951829:+
Coord C1 exon
chr1:160950841-160951122
Coord A exon
NA
Coord C2 exon
chr1:160951678-160951829
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGT
5' ss Score
5.32
3' ss Seq
CCACATCCTGTACCTCCAAGGGG
3' ss Score
2.83
Exon sequences
Seq C1 exon
GTTTCGTAAAATGAACAAACGTCTGGTTCCCAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCACCTATACTTTCTGATGAAAGTGCAGTGGACTTGTCCAACAGAAAACCTCCTGCACTCCCAAATGGAATTGCATCGTCAGGGAGCACAGTGACACAACTGATTCCACGTGGGACAGACCCCAGCTTTGATTCTTCTCTGAAACCAGTAAAGCTAGACCACCTGAGCAGTAGTGCTCCGGGGTCCCCTCCTGACCT
Seq A exon
NA
Seq C2 exon
GGGACCAACAGATCTGCCTCCCATGCCTGTCACCAAACCAATTCAGATGGTACCTCGAGGTTCTCAGCTATATCCAGCACAACAAGCAGATGTTTATTATCAGGATCCTCGAGGAAGTGCCCCAGCTTTTGAGACAGCACCTTACCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423-16-21,16-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=NA C2=0.866
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAACTGATTCCACGTGGG
R:
TTGGTTTGGTGACAGGCATGG
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types