MmuALTA1032539-2/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18858524-18862832:+
Coord C1 exon
chr7:18858524-18858653
Coord A exon
chr7:18862686-18862731
Coord C2 exon
chr7:18862732-18862832
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TATTGGTCATCTTTTGTCAGGAC
3' ss Score
5.2
Exon sequences
Seq C1 exon
GGCATGCTGCTGAGGACAGTCAGGATGTTGCTAGCTCTGCTACAGCTTCAGCTGGATCTGCACTCCCTGTTGTATTGGCGGTGGCACTGGCCAGAGCCAACTGAATCCAGAACACAAAGGACAGGACCAG
Seq A exon
GACTCCATAGAAAAACTTCTGGTGATGTTCTGGTGGCTTCTTGCAG
Seq C2 exon
CTTCTGCAGACTCAGGCCGATTGGCAGAGTGATGTCGGCTGATACAGTCTCATGTGGAGTTTTGCTAAGACAGACTCACGTGCTGAAGCAAAACCCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987-13-28,13-27,13-26,13-25,13-24-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGCTACAGCTTCAGCT
R:
CGACATCACTCTGCCAATCGG
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types