MmuEX1017266 @ mm10
Exon Skipping
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18839966-18863113:+
Coord C1 exon
chr7:18839966-18840091
Coord A exon
chr7:18858524-18858653
Coord C2 exon
chr7:18862686-18863113
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCATGGCGGGCTGGTTACAGGGC
3' ss Score
3.12
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTTGCACAAAACTCCATTTGAGAAAAATGAAAGCCAGTTCTGGAAAGCCCAGAGAATTCAGACCAGCAGTCCTACTGTTGATCTTAGGGCTGCTCCTTAGAGACTCACGGGGATCCAGCATCCAAG
Seq A exon
GGCATGCTGCTGAGGACAGTCAGGATGTTGCTAGCTCTGCTACAGCTTCAGCTGGATCTGCACTCCCTGTTGTATTGGCGGTGGCACTGGCCAGAGCCAACTGAATCCAGAACACAAAGGACAGGACCAG
Seq C2 exon
GACTCCATAGAAAAACTTCTGGTGATGTTCTGGTGGCTTCTTGCAGCTTCTGCAGACTCAGGCCGATTGGCAGAGTGATGTCGGCTGATACAGTCTCATGTGGAGTTTTGCTAAGACAGACTCACGTGCTGAAGCAAAACCCATTGGAGGACACATGATGTTTGGAGGGAGTATAAATAGGATCTAATGGACAGTGACTGCGGGCTTGCAAGCTTTGTTGGTCTCTACTGATCTTCACTTCATTGAGAGAGGCACAAAGAACTTCTGGCGCCCCTGCTGGTCCTGGTTGCTCCTGCTGACTGATGCTAATTTGACTGAGGCTTGGCTGTTTCTGCCGGGTGGGGCCACCACTGATGATTCATATTTGATATCCTGACACTACTGAACTGGACTGCTAGTATATTCGTGAAGTGTTTATGAGTGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987_MULTIEX1-8/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.294 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCTCCTTAGAGACTCA
R:
CCCGCAGTCACTGTCCATTAG
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types