RnoEX6001486 @ rn6
Exon Skipping
Gene
ENSRNOG00000057645 | Micb
Description
MHC class I polypeptide-related sequence B [Source:RGD Symbol;Acc:1564508]
Coordinates
chr1:79770133-79772092:+
Coord C1 exon
chr1:79770133-79770241
Coord A exon
chr1:79771399-79771920
Coord C2 exon
chr1:79772071-79772092
Length
522 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCTCTTCTCCCAGGTT
3' ss Score
10.94
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGCCACGTGCACCCAAAGCTGACCTAGTTAAGACGTTCTTGGATGAGACATGTCCTGCTCGGCTCCAGAGACACCTGGCTTCCTTGAGTAATGTTCTGCCGGATACAG
Seq A exon
GTTCCCCAGTGGTGATTGTGACCTGCAGGAATTATCCCGTGGGCAGGATCACGCTGACATGCCGGGCTTTTAATCTGAGTTCCCGTGTGGCCACCCTGCTCTGGCTTCGGGACGGGAAGCCGGTACAGCAGGATGTCTTTGGGCCTGGGACCATCCTGCCCAGTGGGGACGGGACCTACCAGACCTGGGTGTCCATTCGGGTTCTTCCTGGACAGGAACCACAGTTCGCCTGCAACCTGAGGCATAGCAACCGCACCATCATGCAGACCGCTGTCTCTGGCGAGAGCATGGGATGGCCATCTGCCTCATGGGCTACGAGGCAAGAGGCGGAAGGACCCCATAGGACACACAATGACCACGTGGTTGATGGCGGACTGGTTACGGGGAATGCTAATAAGGACAGTCCAGATGCTTCCAGCTGTGCTACAGCCTCAGCCATATCTGCGTTCCCCGTTGTCGTGTTGTCTGTGGCACTGCCCAGAGCCAACTGAATCCAGAGCCTAAAGGATAAGAAGCTTCCAG
Seq C2 exon
TTAGGAGGGACAGGACGTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057645-'5-9,'5-8,7-9=AN
Average complexity
A_C2
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.307 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(18.2=86.5)
A:
PF0765410=C1-set=WD(100=47.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]