BtaEX0000373 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility class I related protein (MIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001127317]
Coordinates
chr23:27659363-27726499:-
Coord C1 exon
chr23:27726236-27726499
Coord A exon
chr23:27725595-27725654
Coord C2 exon
chr23:27659363-27659521
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTTTCTCCCCACAGAGC
3' ss Score
13.59
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GCTTACATTCCCTCCAGGAGACCGTGGGCTGTGATATCAATGAAGACAGCCACCCCCAGGGCTTCCGGCTTCTCTACTTCAATGGGGAGCTCCTCCTCTCCTGCTACCCGGAGCCCCACGGATGTACCCTGCCCCAGTCCTCGGCTCGGACCTTGGCCATGGAAATGGAGTTAAGCAAGCATTACCAGGCCCACGTGCAGGGAGAACTTTGTAGGAGACTGCGGAGCTACCTAGAATCCTGGCCGGGCTTCACGGAGAGGACAG
Seq A exon
AGCCCCCAGCCGTGAATGTGACCTGCAGCCAGGACTCAGAGGGCATGGTCCACCTCACAG
Seq C2 exon
AGCCTATTAGACTACAAGACCTGGATCAATTCCAGACGGAACCAACTGATCATAATGGCCTCACACACCCAGAATTTCAGTCCTTGTGTCACACTCCGGCTCCATCAGTTTAACAGGGGAAGCTTAGAATCTGCCGCCAGGAGGCCTGAATTCAGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010166_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.286 C2=0.541
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(47.6=89.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGCAGGGAGAACTTTGT
R:
TCTGGGTGTGTGAGGCCATTA
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development